Welcome to PhosPhAt 4.0
References to PhosPhAt: We kindly ask users to cite the following
papers when publishing results derived from the use of PhosPhAt
- Kinase-Target interactions: Zulawski M, Braginets
R, Schulze WX (2013) PhosPhAt goes kinases – Searchable protein
kinase target information in the plant phosphorylation site database PhosPhAt.
Nucleic Acids Research 41: (NAR
[»] | PubMed
[»])
- Phosphorylation site database and predictor: Durek
P, Schmidt R, Heazlewood JL, Jones A, Maclean D, Nagel A, Kersten B, Schulze
WX (2010) PhosPhAt: the Arabidopsis thaliana phosphorylation site database.
An update. Nucleic Acids Research 38: D828-D834 (NAR
[»] | PubMed
[»])
- Original Phosphorylation site database: Heazlewood
JL, Durek P, Hummel J, Selbig J, Weckwerth W, Walther D, Schulze WX (2008)
PhosPhAt: A Database of phosphorylation sites in Arabidopsis thaliana
and a plant specific phosphorylation site predictor. Nucleic Acids Research
36: D1015-D1021 (NAR
[»] | PubMed
[»])
Phosphorylation site database: The Arabidopsis Protein Phosphorylation
Site Database (PhosPhAt 4.0) contains information on Arabidopsis phosphorylation
sites which were identified by mass spectrometry in large scale experiments
by different research groups. Specific information about the peptide properties,
their annotated biological function as well as the experimental and analytical
context is given. For a majority of peptides, the actual annotated mass spectrum
is displayed in interactive manner.
Phosphorylation site predictor: The PhosPhAt service has
a built-in plant specific phosphorylation site predictor trained on the experimental
dataset for Serine, threonine and tyrosine phosphorylation (pSer, pThr, pTyr).
Protein sequences or Arabidopsis AGI gene identifier can be submitted to the
predictor.
Kinase - target relationships: curated information about kinase - target information
has been
Data sources:
| Publication |
PubMed |
| Wang X, et al.
(2012) Journal of Proteomics |
23111157
[»] |
| Meyer LJ, et
al. (2012) Plant Physiology |
22440515
[»] |
| Lan P, et al.
(2012) Plant Physiology |
22438062
[»] |
| Mayank P, et
al. (2012) The Plant Journal |
22631563
[»] |
| Wang X, et al.
(2012) Journal of Proteome Research |
22329444
[»] |
| Engelsberger
WE, et al. (2012) The Plant Journal |
22060019
[»] |
| Reiland S, et
al. (2011) PNAS |
21768351
[»] |
| Kline KG, et
al. (2010) PNAS |
20733066
[»] |
| Nakagami H, et
al. (2010) Plant Physiology |
20466843
[»] |
| Chen Y, et al.
(2010) The Plant Journal |
20374526
[»] |
| Umezawa, et al.
(2009) PNAS |
19805022
[»] |
| Reiland S, et
al. (2009) Plant Physiology |
19376835
[»] |
| Ito J, et al.
(2009) Proteomics |
19688752
[»] |
| Wang Z, et al.
(2009) Journal of Proteomics |
19341826
[»] |
| Li H, et al.
(2009) Proteomics |
19253305
[»] |
| Jones A, et al.
(2009) Journal of Proteomics |
19245862
[»] |
| Whiteman S, et
al. (2008) Proteomics |
18686298
[»] |
| Sugiyama N, et
al. (2008) Molecular Systems Biology |
18463617
[»] |
| de la Fuente
van Bentem S, et al. (2008) Journal of Proteome Research |
18433157
[»] |
| Carroll A, et
al. (2008) Molecular and Cellular Proteomics |
17934214
[»] |
| Nühse T,
et al. (2007) The Plant Journal |
17651370
[»] |
| Niittylä
T, et al. (2007) Molecular and Cellular Proteomics |
17586839
[»] |
| Benschop J, et
.al. (2007) Molecular and Cellular Proteomics |
17317660
[»] |
| de la Fuente
van Bentem S, et al. (2006) Nucleic Acids Research |
16807317
[»] |
| Wolschin F, et
al. (2005) Plant Methods |
16270910
[»] |
| Nühse T,
et al. (2004) The Plant Cell |
15308754
[»] |
