Welcome to PhosPhAt 3.0
References to PhosPhAt: We kindly ask users to cite the following
papers when publishing results derived from the use of PhosPhAt:
-
Durek P, Schmidt R, Heazlewood JL, Jones A, Maclean D, Nagel A, Kersten B, Schulze WX
(2009) PhosPhAt: the Arabidopsis thaliana phosphorylation site database. An update.
Nucleic Acids Res. 2009 Oct 30. PMID: 19880383
(NAR |
PubMed)
-
Heazlewood JL, Durek P, Hummel J, Selbig J, Weckwerth W, Walther D, Schulze
WX (2008) PhosPhAt: A Database of phosphorylation sites in Arabidopsis thaliana
and a plant specific phosphorylation site predictor. Nucleic Acids Research
38: D1015-D1021 (NAR |
PubMed)
Phosphorylation site database: The Arabidopsis Protein Phosphorylation
Site Database (PhosPhAt 3.0) contains information on Arabidopsis phosphorylation
sites which were identified by mass spectrometry in large scale experiments
by different research groups. Specific information about the peptide properties,
their annotated biological function as well as the experimental and analytical
context is given. For a majority of peptides, the actual annotated mass spectrum
is displayed in interactive manner.
Phosphorylation site predictor: The PhosPhAt service has
a built-in plant specific phosphorylation site predictor trained on the experimental
dataset for Serine, threonine and tyrosine phosphorylation (pSer, pThr, pTyr).
Protein sequences or Arabidopsis AGI gene identifier can be submitted to the
predictor.
Data sources:
| Publication |
PubMed |
| Nühse T, et al.
(2004) Plant Cell |
15308754 |
| Wolschin F, et
al. (2005) Plant Methods |
16270910 |
| de la Fuente
van Bentem S, et al. (2006) Nucleic Acids Research |
16807317 |
| Benschop J, et
.al. (2007) Molecular and Cellular Proteomics |
17317660 |
| Niittylä T, et
al. (2007) Molecular and Cellular Proteomics |
17586839 |
| Nühse T, et al.
(2007) The Plant Journal |
17651370 |
| Carroll A, et
al. (2007) Molecular and Cellular Proteomics |
17934214 |
| Sugiyama N, et
al. (2008) Molecular Systems Biology |
18463617 |
| de la Fuente
van Bentem S, et al. (2008) Journal of Proteome Research |
18433157 |
| Whiteman S, et
al. (2008) Proteomics |
18686298 |
| Jones A, et al.
(2009) Journal of Proteomics |
19245862 |
| Li H,. et al.
(2009) Proteomics |
19253305 |
| Reiland S, et
al. (2009) Plant Physiology |
19376835 |
