The Arabidopsis Protein Phosphorylation Site Database
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Welcome to PhosPhAt 3.0

References to PhosPhAt: We kindly ask users to cite the following papers when publishing results derived from the use of PhosPhAt:


Phosphorylation site database: The Arabidopsis Protein Phosphorylation Site Database (PhosPhAt 3.0) contains information on Arabidopsis phosphorylation sites which were identified by mass spectrometry in large scale experiments by different research groups. Specific information about the peptide properties, their annotated biological function as well as the experimental and analytical context is given. For a majority of peptides, the actual annotated mass spectrum is displayed in interactive manner.

Phosphorylation site predictor: The PhosPhAt service has a built-in plant specific phosphorylation site predictor trained on the experimental dataset for Serine, threonine and tyrosine phosphorylation (pSer, pThr, pTyr). Protein sequences or Arabidopsis AGI gene identifier can be submitted to the predictor.

Data sources:
Publication PubMed
Nühse T, et al. (2004) Plant Cell 15308754
Wolschin F, et al. (2005) Plant Methods 16270910
de la Fuente van Bentem S, et al. (2006) Nucleic Acids Research 16807317
Benschop J, et .al. (2007) Molecular and Cellular Proteomics 17317660
Niittylä T, et al. (2007) Molecular and Cellular Proteomics 17586839
Nühse T, et al. (2007) The Plant Journal 17651370
Carroll A, et al. (2007) Molecular and Cellular Proteomics 17934214
Sugiyama N, et al. (2008) Molecular Systems Biology 18463617
de la Fuente van Bentem S, et al. (2008) Journal of Proteome Research 18433157
Whiteman S, et al. (2008) Proteomics 18686298
Jones A, et al. (2009) Journal of Proteomics 19245862
Li H,. et al. (2009) Proteomics 19253305
Reiland S, et al. (2009) Plant Physiology 19376835